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UCNE: SOX2_Cassandra
(id = 24970)

General information about the entry
Entry location:intergenic
Position:chr3:180957080-180957282
Length:203 nt
Sequence:SOX2_Cassandra.fasta
Upstream gene:DNAJC19
Downstream gene:SOX2OT
Paralogs:
Ultraconserved Genomic Regulatory Block (UGRB): SOX2_cluster: chr3:180436793-182314792
External links:
CONDOR database:
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr9:18176899-18177100        Identity: >95%
This UCNE has 1 paralogous region in Chicken

Conservation in other species:
Mouse (mm10):
Region #1:   chr3:34252844-34253046   Identity: 89.66%    E-value: 1.2e-37   Bit-score: 161.9

Armadillo (dasNov1):
Region #1:   scaffold_1465:91391-91590   Identity: 98%    E-value: 1.4e-43   Bit-score: 181.7

Opossum (monDom5):
Region #1:   chr7:204351117-204351321   Identity: 85.44%    E-value: 6.7e-30   Bit-score: 136.6

Platypus (ornAna1):
Region #1:   Contig5652:5354-5556   Identity: 97.54%    E-value: 3.5e-44   Bit-score: 183.1

Zebra_finch (taeGut1):
Region #1:   chr9:19523982-19524183   Identity: 96.55%    E-value: 3.4e-42   Bit-score: 175.9

Lizard (anoCar2):
Region #1:   chr3:1354162-1354362   Identity: 89.22%    E-value: 6.4e-37   Bit-score: 158.9

Painted_turtle (chrPic1):
Region #1:   JH584502:3341449-3341649   Identity: 94.03%    E-value: 2e-39   Bit-score: 167.8

Xenopus (xenTro3):
Region #1:   GL172881:1333452-1333649   Identity: 84.34%    E-value: 3.1e-29   Bit-score: 133.1

Fugu (fr2):
Medaka (oryLat2):
Stickleback (gasAcu1):
Tetraodon (tetNig2):
Zebrafish (danRer7):
Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):