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UCNE: SOX2_Franz
(id = 24977)

General information about the entry
Entry location:intergenic
Position:chr3:181022376-181022578
Length:203 nt
Sequence:SOX2_Franz.fasta
Upstream gene:DNAJC19
Downstream gene:SOX2OT
Paralogs:
Ultraconserved Genomic Regulatory Block (UGRB): SOX2_cluster: chr3:180436793-182314792
External links:
CONDOR database:CRCNE00001809;
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr9:18154281-18154483        Identity: >95%
Conservation in other species:
Mouse (mm10):
Region #1:   chr3:34314352-34314554   Identity: 98.03%    E-value: 6e-43   Bit-score: 179.5

Armadillo (dasNov1):
Region #1:   scaffold_1465:28631-28833   Identity: 99.01%    E-value: 5e-37   Bit-score: 160

Opossum (monDom5):
Region #1:   chr7:204426182-204426386   Identity: 96.59%    E-value: 3.6e-36   Bit-score: 157.4

Platypus (ornAna1):
Region #1:   Ultra347:654796-654998   Identity: 98.52%    E-value: 6.7e-43   Bit-score: 178.9

Zebra_finch (taeGut1):
Region #1:   chr9:19501784-19501986   Identity: 98.52%    E-value: 2.1e-43   Bit-score: 179.9
This UCNE has 1 paralogous region in Zebra_finch

Lizard (anoCar2):
Region #1:   chr3:1297728-1297928   Identity: 94.06%    E-value: 1.8e-39   Bit-score: 167.3

Painted_turtle (chrPic1):
Region #1:   JH584502:3392250-3392452   Identity: 98.03%    E-value: 4.6e-41   Bit-score: 173.2

Xenopus (xenTro3):
Region #1:   GL172881:1299104-1299305   Identity: 89.66%    E-value: 3.6e-33   Bit-score: 146.2

Fugu (fr2):
Medaka (oryLat2):
Stickleback (gasAcu1):
Tetraodon (tetNig2):
Zebrafish (danRer7):
Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):