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UCNE: SOX2_Hamlet
(id = 24983)

General information about the entry
Entry location:intergenic
Position:chr3:181135579-181135903
Length:325 nt
Sequence:SOX2_Hamlet.fasta
Upstream gene:DNAJC19
Downstream gene:SOX2OT
Paralogs:
Ultraconserved Genomic Regulatory Block (UGRB): SOX2_cluster: chr3:180436793-182314792
External links:
CONDOR database:
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr9:18114454-18114777        Identity: >95%
Conservation in other species:
Mouse (mm10):
Region #1:   chr3:34411518-34411839   Identity: 96.92%    E-value: 3.5e-80   Bit-score: 303.9

Armadillo (dasNov1):
Region #1:   scaffold_29434:51160-51485   Identity: 98.47%    E-value: 2.4e-77   Bit-score: 294.6

Opossum (monDom5):
Region #1:   chr7:204531086-204531405   Identity: 90.71%    E-value: 3.1e-65   Bit-score: 254.7

Platypus (ornAna1):
Region #1:   Ultra347:743128-743449   Identity: 95.03%    E-value: 2.4e-77   Bit-score: 294

Zebra_finch (taeGut1):
Region #1:   chr9:19465909-19466227   Identity: 95.61%    E-value: 5.3e-74   Bit-score: 282.2

Lizard (anoCar2):
Region #1:   chr3:1201096-1201421   Identity: 92.33%    E-value: 1.9e-70   Bit-score: 270.9

Painted_turtle (chrPic1):
Region #1:   JH584502:3467089-3467412   Identity: 95.68%    E-value: 1.3e-75   Bit-score: 288.6

Xenopus (xenTro3):
Region #1:   GL172881:1245047-1245361   Identity: 89.21%    E-value: 6.6e-59   Bit-score: 232.3
This UCNE has 1 paralogous region in Xenopus

Fugu (fr2):
Medaka (oryLat2):
Stickleback (gasAcu1):
Tetraodon (tetNig2):
Zebrafish (danRer7):
Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):