14 days-old seedlings grown under white light with high R/FR ratio in 12h:12h long days circles. Sample marked as shade had an additional 2h treatment of lor R/FR light.
Data available at: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35059
Input file formats : SRA
From A. thaliana (Feb 2011 TAIR10/araTha1).
Reads files were mapped to TAIR10 genome using bowtie. The resulting SAM filee were converted into SGA using samTools, BedTools and ChIP-Seq tools.