Schmitges 2016, ChIP-seq against GFP-tagged C2H2-ZF proteins expressed in HEK293 cells.

Description

ChIP-seq against 108 GFP-tagged C2H2-ZF proteins expressed in stable transgenic HEK293 cells. Cells were harvested 24h after transgene induction by doxocycline.

This series also contains uniformly processed peak lists provided by the authors of the GEO series. Most peak lists were derived from pooled replicates of samples from this series. 23 additional peak lists of unknown data and tissue origin are also included.

Source

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM2026739_FEZF1_rep1.sga HEK293|FEZF1-GFP||rep1 FEZF1 GSM2026739
2 GSM2026740_ZNF320_rep1.sga HEK293|ZNF320-GFP||rep1 ZNF320 GSM2026740
3 GSM2026741_ZNF320_rep2.sga HEK293|ZNF320-GFP||rep2 ZNF320 GSM2026741
4 GSM2026742_ZBTB42_rep1.sga HEK293|ZBTB42-GFP||rep1 ZBTB42 GSM2026742
5 GSM2026743_ZNF263_rep1.sga HEK293|ZNF263-GFP||rep1 ZNF263 GSM2026743
6 GSM2026744_ZNF264_rep1.sga HEK293|ZNF264-GFP||rep1 ZNF264 GSM2026744
7 GSM2026745_ZBTB14_rep1.sga HEK293|ZBTB14-GFP||rep1 ZBTB14 GSM2026745
8 GSM2026746_ZNF354A_rep1.sga HEK293|ZNF354A-GFP||rep1 ZNF354A GSM2026746
9 GSM2026747_ZNF324_rep1.sga HEK293|ZNF324-GFP||rep1 ZNF324 GSM2026747
10 GSM2026748_PRDM1_rep1.sga HEK293|PRDM1-GFP||rep1 PRDM1 GSM2026748
11 GSM2026749_KLF7_rep1.sga HEK293|KLF7-GFP||rep1 KLF7 GSM2026749
12 GSM2026750_SNAI1_rep1.sga HEK293|SNAI1-GFP||rep1 SNAI1 GSM2026750
13 GSM2026751_SNAI1_rep2.sga HEK293|SNAI1-GFP||rep2 SNAI1 GSM2026751
14 GSM2026752_SNAI1_rep3.sga HEK293|SNAI1-GFP||rep3 SNAI1 GSM2026752
15 GSM2026753_SP1_rep1.sga HEK293|SP1-GFP||rep1 SP1 GSM2026753
16 GSM2026754_ZSCAN22_rep1.sga HEK293|ZSCAN22-GFP||rep1 ZSCAN22 GSM2026754
17 GSM2026755_ZSCAN22_rep3.sga HEK293|ZSCAN22-GFP||rep3 ZSCAN22 GSM2026755
18 GSM2026756_ZSCAN22_rep4.sga HEK293|ZSCAN22-GFP||rep4 ZSCAN22 GSM2026756
19 GSM2026757_ZBTB48_rep1.sga HEK293|ZBTB48-GFP||rep1 ZBTB48 GSM2026757
20 GSM2026758_GLI4_rep1.sga HEK293|GLI4-GFP||rep1 GLI4 GSM2026758
21 GSM2026759_EGR2_rep1.sga HEK293|EGR2-GFP||rep1 EGR2 GSM2026759
22 GSM2026760_EGR2_rep2.sga HEK293|EGR2-GFP||rep2 EGR2 GSM2026760
23 GSM2026761_ZNF35_rep2.sga HEK293|ZNF35-GFP||rep2 ZNF35 GSM2026761
24 GSM2026762_ZNF250_rep2.sga HEK293|ZNF250-GFP||rep2 ZNF250 GSM2026762
25 GSM2026763_ZNF708_rep1.sga HEK293|ZNF708-GFP||rep1 ZNF708 GSM2026763
26 GSM2026764_ZNF18_rep1.sga HEK293|ZNF18-GFP||rep1 ZNF18 GSM2026764
27 GSM2026765_ZNF22_rep1.sga HEK293|ZNF22-GFP||rep1 ZNF22 GSM2026765
28 GSM2026766_ZNF22_rep2.sga HEK293|ZNF22-GFP||rep2 ZNF22 GSM2026766
29 GSM2026767_ZNF22_rep3.sga HEK293|ZNF22-GFP||rep3 ZNF22 GSM2026767
30 GSM2026768_ZNF22_rep4.sga HEK293|ZNF22-GFP||rep4 ZNF22 GSM2026768
31 GSM2026769_ZNF22_rep5.sga HEK293|ZNF22-GFP||rep5 ZNF22 GSM2026769
32 GSM2026770_ZNF37A_rep1.sga HEK293|ZNF37A-GFP||rep1 ZNF37A GSM2026770
33 GSM2026771_ZNF30_rep1.sga HEK293|ZNF30-GFP||rep1 ZNF30 GSM2026771
34 GSM2026772_ZNF30_rep2.sga HEK293|ZNF30-GFP||rep2 ZNF30 GSM2026772
35 GSM2026773_ZNF30_rep3.sga HEK293|ZNF30-GFP||rep3 ZNF30 GSM2026773
36 GSM2026774_ZNF8_rep1.sga HEK293|ZNF8-GFP||rep1 ZNF8 GSM2026774
37 GSM2026775_YY1_rep1.sga HEK293|YY1-GFP||rep1 YY1 GSM2026775
38 GSM2026776_YY1_rep2.sga HEK293|YY1-GFP||rep2 YY1 GSM2026776
39 GSM2026777_YY1_rep4.sga HEK293|YY1-GFP||rep4 YY1 GSM2026777
40 GSM2026778_MZF1_rep2.sga HEK293|MZF1-GFP||rep2 MZF1 GSM2026778
41 GSM2026779_ZNF76_rep1.sga HEK293|ZNF76-GFP||rep1 ZNF76 GSM2026779
42 GSM2026780_CTCF_rep1.sga HEK293|CTCF-GFP||rep1 CTCF GSM2026780
43 GSM2026781_CTCF_rep2.sga HEK293|CTCF-GFP||rep2 CTCF GSM2026781
44 GSM2026782_CTCF_rep3.sga HEK293|CTCF-GFP||rep3 CTCF GSM2026782
45 GSM2026783_CTCF_rep4.sga HEK293|CTCF-GFP||rep4 CTCF GSM2026783
46 GSM2026784_CTCF_rep5.sga HEK293|CTCF-GFP||rep5 CTCF GSM2026784
47 GSM2026785_CTCF_rep6.sga HEK293|CTCF-GFP||rep6 CTCF GSM2026785
48 GSM2026786_CTCF_rep7.sga HEK293|CTCF-GFP||rep7 CTCF GSM2026786
49 GSM2026787_ZNF41_rep1.sga HEK293|ZNF41-GFP||rep1 ZNF41 GSM2026787
50 GSM2026788_ZNF41_rep3.sga HEK293|ZNF41-GFP||rep3 ZNF41 GSM2026788
51 GSM2026789_ZNF136_rep1.sga HEK293|ZNF136-GFP||rep1 ZNF136 GSM2026789
52 GSM2026790_ZNF140_rep1.sga HEK293|ZNF140-GFP||rep1 ZNF140 GSM2026790
53 GSM2026791_ZNF134_rep1.sga HEK293|ZNF134-GFP||rep1 ZNF134 GSM2026791
54 GSM2026792_MAZ_rep1.sga HEK293|MAZ-GFP||rep1 MAZ GSM2026792
55 GSM2026793_ZNF121_rep1.sga HEK293|ZNF121-GFP||rep1 ZNF121 GSM2026793
56 GSM2026794_ZNF121_rep2.sga HEK293|ZNF121-GFP||rep2 ZNF121 GSM2026794
57 GSM2026795_ZNF280A_rep1.sga HEK293|ZNF280A-GFP||rep1 ZNF280A GSM2026795
58 GSM2026796_SP2_rep1.sga HEK293|SP2-GFP||rep1 SP2 GSM2026796
59 GSM2026797_SP4_rep1.sga HEK293|SP4-GFP||rep1 SP4 GSM2026797
60 GSM2026798_SP4_rep2.sga HEK293|SP4-GFP||rep2 SP4 GSM2026798
61 GSM2026799_SP4_rep3.sga HEK293|SP4-GFP||rep3 SP4 GSM2026799
62 GSM2026800_ZNF85_rep1.sga HEK293|ZNF85-GFP||rep1 ZNF85 GSM2026800
63 GSM2026801_ZNF33A_rep1.sga HEK293|ZNF33A-GFP||rep1 ZNF33A GSM2026801
64 GSM2026802_EGR3_rep1.sga HEK293|EGR3-GFP||rep1 EGR3 GSM2026802
65 GSM2026803_ZNF816_rep1.sga HEK293|ZNF816-GFP||rep1 ZNF816 GSM2026803
66 GSM2026804_KLF1_rep1.sga HEK293|KLF1-GFP||rep1 KLF1 GSM2026804
67 GSM2026805_ZNF146_rep1.sga HEK293|ZNF146-GFP||rep1 ZNF146 GSM2026805
68 GSM2026806_ZBTB6_rep1.sga HEK293|ZBTB6-GFP||rep1 ZBTB6 GSM2026806
69 GSM2026807_ZBTB6_rep2.sga HEK293|ZBTB6-GFP||rep2 ZBTB6 GSM2026807
70 GSM2026808_ZBTB6_rep3.sga HEK293|ZBTB6-GFP||rep3 ZBTB6 GSM2026808
71 GSM2026809_ZNF528_rep1.sga HEK293|ZNF528-GFP||rep1 ZNF528 GSM2026809
72 GSM2026810_ZNF528_rep3.sga HEK293|ZNF528-GFP||rep3 ZNF528 GSM2026810
73 GSM2026811_ZNF528_rep4.sga HEK293|ZNF528-GFP||rep4 ZNF528 GSM2026811
74 GSM2026812_ZNF260_rep1.sga HEK293|ZNF260-GFP||rep1 ZNF260 GSM2026812
75 GSM2026813_ZNF394_rep1.sga HEK293|ZNF394-GFP||rep1 ZNF394 GSM2026813
76 GSM2026814_ZNF667_rep1.sga HEK293|ZNF667-GFP||rep1 ZNF667 GSM2026814
77 GSM2026815_ZNF770_rep1.sga HEK293|ZNF770-GFP||rep1 ZNF770 GSM2026815
78 GSM2026816_ZNF774_rep1.sga HEK293|ZNF774-GFP||rep1 ZNF774 GSM2026816
79 GSM2026817_ZNF549_rep1.sga HEK293|ZNF549-GFP||rep1 ZNF549 GSM2026817
80 GSM2026818_ZNF449_rep1.sga HEK293|ZNF449-GFP||rep1 ZNF449 GSM2026818
81 GSM2026819_ZNF322_rep2.sga HEK293|ZNF322-GFP||rep2 ZNF322 GSM2026819
82 GSM2026820_ZNF574_rep2.sga HEK293|ZNF574-GFP||rep2 ZNF574 GSM2026820
83 GSM2026821_ZNF467_rep2.sga HEK293|ZNF467-GFP||rep2 ZNF467 GSM2026821
84 GSM2026822_ZNF554_rep1.sga HEK293|ZNF554-GFP||rep1 ZNF554 GSM2026822
85 GSM2026823_ZNF329_rep1.sga HEK293|ZNF329-GFP||rep1 ZNF329 GSM2026823
86 GSM2026824_ZNF547_rep1.sga HEK293|ZNF547-GFP||rep1 ZNF547 GSM2026824
87 GSM2026825_ZSCAN29_rep1.sga HEK293|ZSCAN29-GFP||rep1 ZSCAN29 GSM2026825
88 GSM2026826_ZNF595_rep1.sga HEK293|ZNF595-GFP||rep1 ZNF595 GSM2026826
89 GSM2026827_ZNF34_rep1.sga HEK293|ZNF34-GFP||rep1 ZNF34 GSM2026827
90 GSM2026828_ZFP82_rep1.sga HEK293|ZFP82-GFP||rep1 ZFP82 GSM2026828
91 GSM2026829_OSR2_rep1.sga HEK293|OSR2-GFP||rep1 OSR2 GSM2026829
92 GSM2026830_ZNF513_rep1.sga HEK293|ZNF513-GFP||rep1 ZNF513 GSM2026830
93 GSM2026831_ZNF454_rep2.sga HEK293|ZNF454-GFP||rep2 ZNF454 GSM2026831
94 GSM2026832_GLIS1_rep1.sga HEK293|GLIS1-GFP||rep1 GLIS1 GSM2026832
95 GSM2026833_ZNF784_rep1.sga HEK293|ZNF784-GFP||rep1 ZNF784 GSM2026833
96 GSM2026834_ZNF680_rep1.sga HEK293|ZNF680-GFP||rep1 ZNF680 GSM2026834
97 GSM2026835_ZNF680_rep2.sga HEK293|ZNF680-GFP||rep2 ZNF680 GSM2026835
98 GSM2026836_ZFP28_rep1.sga HEK293|ZFP28-GFP||rep1 ZFP28 GSM2026836
99 GSM2026837_ZFP28_rep2.sga HEK293|ZFP28-GFP||rep2 ZFP28 GSM2026837
100 GSM2026838_ZNF563_rep1.sga HEK293|ZNF563-GFP||rep1 ZNF563 GSM2026838
101 GSM2026839_ZNF502_rep1.sga HEK293|ZNF502-GFP||rep1 ZNF502 GSM2026839
102 GSM2026840_ZNF502_rep2.sga HEK293|ZNF502-GFP||rep2 ZNF502 GSM2026840
103 GSM2026841_ZNF596_rep2.sga HEK293|ZNF596-GFP||rep2 ZNF596 GSM2026841
104 GSM2026842_ZNF418_rep1.sga HEK293|ZNF418-GFP||rep1 ZNF418 GSM2026842
105 GSM2026843_ZNF384_rep1.sga HEK293|ZNF384-GFP||rep1 ZNF384 GSM2026843
106 GSM2026844_GTF3A_rep1.sga HEK293|GTF3A-GFP||rep1 GTF3A GSM2026844
107 GSM2026845_ZNF669_rep1.sga HEK293|ZNF669-GFP||rep1 ZNF669 GSM2026845
108 GSM2026846_ZNF419_rep1.sga HEK293|ZNF419-GFP||rep1 ZNF419 GSM2026846
109 GSM2026847_ZSCAN31_rep2.sga HEK293|ZSCAN31-GFP||rep2 ZSCAN31 GSM2026847
110 GSM2026848_ZFP42_rep1.sga HEK293|ZFP42-GFP||rep1 ZFP42 GSM2026848
111 GSM2026849_ZFP42_rep2.sga HEK293|ZFP42-GFP||rep2 ZFP42 GSM2026849
112 GSM2026850_ZNF778_rep1.sga HEK293|ZNF778-GFP||rep1 ZNF778 GSM2026850
113 GSM2026851_ZNF582_rep1.sga HEK293|ZNF582-GFP||rep1 ZNF582 GSM2026851
114 GSM2026852_ZNF582_rep2.sga HEK293|ZNF582-GFP||rep2 ZNF582 GSM2026852
115 GSM2026853_ZIM3_rep1.sga HEK293|ZIM3-GFP||rep1 ZIM3 GSM2026853
116 GSM2026854_ZNF317_rep2.sga HEK293|ZNF317-GFP||rep2 ZNF317 GSM2026854
117 GSM2026855_ZNF317_rep3.sga HEK293|ZNF317-GFP||rep3 ZNF317 GSM2026855
118 GSM2026856_ZNF382_rep1.sga HEK293|ZNF382-GFP||rep1 ZNF382 GSM2026856
119 GSM2026857_ZNF382_rep2.sga HEK293|ZNF382-GFP||rep2 ZNF382 GSM2026857
120 GSM2026858_ZNF382_rep3.sga HEK293|ZNF382-GFP||rep3 ZNF382 GSM2026858
121 GSM2026859_ZNF382_rep4.sga HEK293|ZNF382-GFP||rep4 ZNF382 GSM2026859
122 GSM2026860_ZNF382_rep5.sga HEK293|ZNF382-GFP||rep5 ZNF382 GSM2026860
123 GSM2026861_ZBTB18_rep2.sga HEK293|ZBTB18-GFP||rep2 ZBTB18 GSM2026861
124 GSM2026862_ZNF184_rep1.sga HEK293|ZNF184-GFP||rep1 ZNF184 GSM2026862
125 GSM2026863_SCRT1_rep1.sga HEK293|SCRT1-GFP||rep1 SCRT1 GSM2026863
126 GSM2026864_ZNF341_rep1.sga HEK293|ZNF341-GFP||rep1 ZNF341 GSM2026864
127 GSM2026865_ZNF436_rep1.sga HEK293|ZNF436-GFP||rep1 ZNF436 GSM2026865
128 GSM2026866_ZNF350_rep1.sga HEK293|ZNF350-GFP||rep1 ZNF350 GSM2026866
129 GSM2026867_ZNF350_rep2.sga HEK293|ZNF350-GFP||rep2 ZNF350 GSM2026867
130 GSM2026868_ZSCAN16_rep1.sga HEK293|ZSCAN16-GFP||rep1 ZSCAN16 GSM2026868
131 GSM2026869_ZSCAN16_rep2.sga HEK293|ZSCAN16-GFP||rep2 ZSCAN16 GSM2026869
132 GSM2026870_ZSCAN16_rep3.sga HEK293|ZSCAN16-GFP||rep3 ZSCAN16 GSM2026870
133 GSM2026871_ZNF768_rep1.sga HEK293|ZNF768-GFP||rep1 ZNF768 GSM2026871
134 GSM2026872_PATZ1_rep1.sga HEK293|PATZ1-GFP||rep1 PATZ1 GSM2026872
135 GSM2026873_ZBTB26_rep1.sga HEK293|ZBTB26-GFP||rep1 ZBTB26 GSM2026873
136 GSM2026874_ZBTB26_rep2.sga HEK293|ZBTB26-GFP||rep2 ZBTB26 GSM2026874
137 GSM2026875_ZFP64_rep1.sga HEK293|ZFP64-GFP||rep1 ZFP64 GSM2026875
138 GSM2026876_ZFP64_rep2.sga HEK293|ZFP64-GFP||rep2 ZFP64 GSM2026876
139 GSM2026877_ZFP64_rep3.sga HEK293|ZFP64-GFP||rep3 ZFP64 GSM2026877
140 GSM2026878_MYNN_rep1.sga HEK293|MYNN-GFP||rep1 MYNN GSM2026878
141 GSM2026879_PRDM6_rep1.sga HEK293|PRDM6-GFP||rep1 PRDM6 GSM2026879
142 GSM2026880_ZNF331_rep1.sga HEK293|ZNF331-GFP||rep1 ZNF331 GSM2026880
143 GSM2026881_ZNF331_rep2.sga HEK293|ZNF331-GFP||rep2 ZNF331 GSM2026881
144 GSM2026882_ZNF586_rep1.sga HEK293|ZNF586-GFP||rep1 ZNF586 GSM2026882
145 GSM2026883_ZNF224_rep1.sga HEK293|ZNF224-GFP||rep1 ZNF224 GSM2026883
146 GSM2026884_KLF15_rep1.sga HEK293|KLF15-GFP||rep1 KLF15 GSM2026884
147 GSM2026885_KLF15_rep2.sga HEK293|KLF15-GFP||rep2 KLF15 GSM2026885
148 GSM2026886_KLF15_rep3.sga HEK293|KLF15-GFP||rep3 KLF15 GSM2026886
149 GSM2026887_ZNF214_rep1.sga HEK293|ZNF214-GFP||rep1 ZNF214 GSM2026887
150 GSM2026888_ZNF490_rep1.sga HEK293|ZNF490-GFP||rep1 ZNF490 GSM2026888
151 GSM2026889_ZNF257_rep1.sga HEK293|ZNF257-GFP||rep1 ZNF257 GSM2026889
152 GSM2026890_ZNF257_rep2.sga HEK293|ZNF257-GFP||rep2 ZNF257 GSM2026890
153 GSM2026891_ZNF281_rep1.sga HEK293|ZNF281-GFP||rep1 ZNF281 GSM2026891
154 GSM2026892_ZBTB12_rep1.sga HEK293|ZBTB12-GFP||rep1 ZBTB12 GSM2026892
155 GSM2026893_ZBTB12_rep3.sga HEK293|ZBTB12-GFP||rep3 ZBTB12 GSM2026893
156 GSM2026896_ZBTB12_rep4.sga HEK293|ZBTB12-GFP||rep4 ZBTB12 GSM2026896
157 GSM2026898_ZBTB12_rep5.sga HEK293|ZBTB12-GFP||rep5 ZBTB12 GSM2026898
158 GSM2026899_ZBTB12_rep6.sga HEK293|ZBTB12-GFP||rep6 ZBTB12 GSM2026899
159 GSM2026900_ZNF175_rep1.sga HEK293|ZNF175-GFP||rep1 ZNF175 GSM2026900
160 GSM2026901_KLF12_rep1.sga HEK293|KLF12-GFP||rep1 KLF12 GSM2026901

ChIP-seq peaks files:

Filename Description Feature GEO-ID
1 GSE76494_CTCF_peaks.sga HEK293|CTCF-GFP||combined CTCF_P GSE76494
2 GSE76494_EGR2_peaks.sga HEK293|EGR2-GFP||combined EGR2_P GSE76494
3 GSE76494_EGR3_peaks.sga HEK293|EGR3-GFP||combined EGR3_P GSE76494
4 GSE76494_FEZF1_peaks.sga HEK293|FEZF1-GFP||combined FEZF1_P GSE76494
5 GSE76494_GLI4_peaks.sga HEK293|GLI4-GFP||combined GLI4_P GSE76494
6 GSE76494_GLIS1_peaks.sga HEK293|GLIS1-GFP||combined GLIS1_P GSE76494
7 GSE76494_GTF3A_peaks.sga HEK293|GTF3A-GFP||combined GTF3A_P GSE76494
8 GSE76494_KLF1_peaks.sga HEK293|KLF1-GFP||combined KLF1_P GSE76494
9 GSE76494_KLF12_peaks.sga HEK293|KLF12-GFP||combined KLF12_P GSE76494
10 GSE76494_KLF15_peaks.sga HEK293|KLF15-GFP||combined KLF15_P GSE76494
11 GSE76494_KLF7_peaks.sga HEK293|KLF7-GFP||combined KLF7_P GSE76494
12 GSE76494_MAZ_peaks.sga HEK293|MAZ-GFP||combined MAZ_P GSE76494
13 GSE76494_MYNN_peaks.sga HEK293|MYNN-GFP||combined MYNN_P GSE76494
14 GSE76494_MZF1_peaks.sga HEK293|MZF1-GFP||combined MZF1_P GSE76494
15 GSE76494_OSR2_peaks.sga HEK293|OSR2-GFP||combined OSR2_P GSE76494
16 GSE76494_PATZ1_peaks.sga HEK293|PATZ1-GFP||combined PATZ1_P GSE76494
17 GSE76494_PRDM1_peaks.sga HEK293|PRDM1-GFP||combined PRDM1_P GSE76494
18 GSE76494_PRDM6_peaks.sga HEK293|PRDM6-GFP||combined PRDM6_P GSE76494
19 GSE76494_SCRT1_peaks.sga HEK293|SCRT1-GFP||combined SCRT1_P GSE76494
20 GSE76494_SNAI1_peaks.sga HEK293|SNAI1-GFP||combined SNAI1_P GSE76494
21 GSE76494_SP1_peaks.sga HEK293|SP1-GFP||combined SP1_P GSE76494
22 GSE76494_SP2_peaks.sga HEK293|SP2-GFP||combined SP2_P GSE76494
23 GSE76494_SP4_peaks.sga HEK293|SP4-GFP||combined SP4_P GSE76494
24 GSE76494_YY1_peaks.sga HEK293|YY1-GFP||combined YY1_P GSE76494
25 GSE76494_ZBTB12_peaks.sga HEK293|ZBTB12-GFP||combined ZBTB12_P GSE76494
26 GSE76494_ZBTB14_peaks.sga HEK293|ZBTB14-GFP||combined ZBTB14_P GSE76494
27 GSE76494_ZBTB18_peaks.sga HEK293|ZBTB18-GFP||combined ZBTB18_P GSE76494
28 GSE76494_ZBTB26_peaks.sga HEK293|ZBTB26-GFP||combined ZBTB26_P GSE76494
29 GSE76494_ZBTB42_peaks.sga HEK293|ZBTB42-GFP||combined ZBTB42_P GSE76494
30 GSE76494_ZBTB48_peaks.sga HEK293|ZBTB48-GFP||combined ZBTB48_P GSE76494
31 GSE76494_ZBTB6_peaks.sga HEK293|ZBTB6-GFP||combined ZBTB6_P GSE76494
32 GSE76494_ZFP28_peaks.sga HEK293|ZFP28-GFP||combined ZFP28_P GSE76494
33 GSE76494_ZFP42_peaks.sga HEK293|ZFP42-GFP||combined ZFP42_P GSE76494
34 GSE76494_ZFP64_peaks.sga HEK293|ZFP64-GFP||combined ZFP64_P GSE76494
35 GSE76494_ZFP82_peaks.sga HEK293|ZFP82-GFP||combined ZFP82_P GSE76494
36 GSE76494_ZIM3_peaks.sga HEK293|ZIM3-GFP||combined ZIM3_P GSE76494
37 GSE76494_ZNF121_peaks.sga HEK293|ZNF121-GFP||combined ZNF121_P GSE76494
38 GSE76494_ZNF134_peaks.sga HEK293|ZNF134-GFP||combined ZNF134_P GSE76494
39 GSE76494_ZNF136_peaks.sga HEK293|ZNF136-GFP||combined ZNF136_P GSE76494
40 GSE76494_ZNF140_peaks.sga HEK293|ZNF140-GFP||combined ZNF140_P GSE76494
41 GSE76494_ZNF146_peaks.sga HEK293|ZNF146-GFP||combined ZNF146_P GSE76494
42 GSE76494_ZNF175_peaks.sga HEK293|ZNF175-GFP||combined ZNF175_P GSE76494
43 GSE76494_ZNF18_peaks.sga HEK293|ZNF18-GFP||combined ZNF18_P GSE76494
44 GSE76494_ZNF184_peaks.sga HEK293|ZNF184-GFP||combined ZNF184_P GSE76494
45 GSE76494_ZNF214_peaks.sga HEK293|ZNF214-GFP||combined ZNF214_P GSE76494
46 GSE76494_ZNF22_peaks.sga HEK293|ZNF22-GFP||combined ZNF22_P GSE76494
47 GSE76494_ZNF224_peaks.sga HEK293|ZNF224-GFP||combined ZNF224_P GSE76494
48 GSE76494_ZNF250_peaks.sga HEK293|ZNF250-GFP||combined ZNF250_P GSE76494
49 GSE76494_ZNF257_peaks.sga HEK293|ZNF257-GFP||combined ZNF257_P GSE76494
50 GSE76494_ZNF260_peaks.sga HEK293|ZNF260-GFP||combined ZNF260_P GSE76494
51 GSE76494_ZNF263_peaks.sga HEK293|ZNF263-GFP||combined ZNF263_P GSE76494
52 GSE76494_ZNF264_peaks.sga HEK293|ZNF264-GFP||combined ZNF264_P GSE76494
53 GSE76494_ZNF280A_peaks.sga HEK293|ZNF280A-GFP||combined ZNF280A_P GSE76494
54 GSE76494_ZNF281_peaks.sga HEK293|ZNF281-GFP||combined ZNF281_P GSE76494
55 GSE76494_ZNF30_peaks.sga HEK293|ZNF30-GFP||combined ZNF30_P GSE76494
56 GSE76494_ZNF317_peaks.sga HEK293|ZNF317-GFP||combined ZNF317_P GSE76494
57 GSE76494_ZNF320_peaks.sga HEK293|ZNF320-GFP||combined ZNF320_P GSE76494
58 GSE76494_ZNF322_peaks.sga HEK293|ZNF322-GFP||combined ZNF322_P GSE76494
59 GSE76494_ZNF324_peaks.sga HEK293|ZNF324-GFP||combined ZNF324_P GSE76494
60 GSE76494_ZNF329_peaks.sga HEK293|ZNF329-GFP||combined ZNF329_P GSE76494
61 GSE76494_ZNF331_peaks.sga HEK293|ZNF331-GFP||combined ZNF331_P GSE76494
62 GSE76494_ZNF33A_peaks.sga HEK293|ZNF33A-GFP||combined ZNF33A_P GSE76494
63 GSE76494_ZNF34_peaks.sga HEK293|ZNF34-GFP||combined ZNF34_P GSE76494
64 GSE76494_ZNF341_peaks.sga HEK293|ZNF341-GFP||combined ZNF341_P GSE76494
65 GSE76494_ZNF35_peaks.sga HEK293|ZNF35-GFP||combined ZNF35_P GSE76494
66 GSE76494_ZNF350_peaks.sga HEK293|ZNF350-GFP||combined ZNF350_P GSE76494
67 GSE76494_ZNF354A_peaks.sga HEK293|ZNF354A-GFP||combined ZNF354A_P GSE76494
68 GSE76494_ZNF37A_peaks.sga HEK293|ZNF37A-GFP||combined ZNF37A_P GSE76494
69 GSE76494_ZNF382_peaks.sga HEK293|ZNF382-GFP||combined ZNF382_P GSE76494
70 GSE76494_ZNF384_peaks.sga HEK293|ZNF384-GFP||combined ZNF384_P GSE76494
71 GSE76494_ZNF394_peaks.sga HEK293|ZNF394-GFP||combined ZNF394_P GSE76494
72 GSE76494_ZNF41_peaks.sga HEK293|ZNF41-GFP||combined ZNF41_P GSE76494
73 GSE76494_ZNF418_peaks.sga HEK293|ZNF418-GFP||combined ZNF418_P GSE76494
74 GSE76494_ZNF419_peaks.sga HEK293|ZNF419-GFP||combined ZNF419_P GSE76494
75 GSE76494_ZNF436_peaks.sga HEK293|ZNF436-GFP||combined ZNF436_P GSE76494
76 GSE76494_ZNF449_peaks.sga HEK293|ZNF449-GFP||combined ZNF449_P GSE76494
77 GSE76494_ZNF454_peaks.sga HEK293|ZNF454-GFP||combined ZNF454_P GSE76494
78 GSE76494_ZNF467_peaks.sga HEK293|ZNF467-GFP||combined ZNF467_P GSE76494
79 GSE76494_ZNF490_peaks.sga HEK293|ZNF490-GFP||combined ZNF490_P GSE76494
80 GSE76494_ZNF502_peaks.sga HEK293|ZNF502-GFP||combined ZNF502_P GSE76494
81 GSE76494_ZNF513_peaks.sga HEK293|ZNF513-GFP||combined ZNF513_P GSE76494
82 GSE76494_ZNF528_peaks.sga HEK293|ZNF528-GFP||combined ZNF528_P GSE76494
83 GSE76494_ZNF547_peaks.sga HEK293|ZNF547-GFP||combined ZNF547_P GSE76494
84 GSE76494_ZNF549_peaks.sga HEK293|ZNF549-GFP||combined ZNF549_P GSE76494
85 GSE76494_ZNF554_peaks.sga HEK293|ZNF554-GFP||combined ZNF554_P GSE76494
86 GSE76494_ZNF563_peaks.sga HEK293|ZNF563-GFP||combined ZNF563_P GSE76494
87 GSE76494_ZNF574_peaks.sga HEK293|ZNF574-GFP||combined ZNF574_P GSE76494
88 GSE76494_ZNF582_peaks.sga HEK293|ZNF582-GFP||combined ZNF582_P GSE76494
89 GSE76494_ZNF586_peaks.sga HEK293|ZNF586-GFP||combined ZNF586_P GSE76494
90 GSE76494_ZNF595_peaks.sga HEK293|ZNF595-GFP||combined ZNF595_P GSE76494
91 GSE76494_ZNF596_peaks.sga HEK293|ZNF596-GFP||combined ZNF596_P GSE76494
92 GSE76494_ZNF667_peaks.sga HEK293|ZNF667-GFP||combined ZNF667_P GSE76494
93 GSE76494_ZNF669_peaks.sga HEK293|ZNF669-GFP||combined ZNF669_P GSE76494
94 GSE76494_ZNF680_peaks.sga HEK293|ZNF680-GFP||combined ZNF680_P GSE76494
95 GSE76494_ZNF708_peaks.sga HEK293|ZNF708-GFP||combined ZNF708_P GSE76494
96 GSE76494_ZNF76_peaks.sga HEK293|ZNF76-GFP||combined ZNF76_P GSE76494
97 GSE76494_ZNF768_peaks.sga HEK293|ZNF768-GFP||combined ZNF768_P GSE76494
98 GSE76494_ZNF770_peaks.sga HEK293|ZNF770-GFP||combined ZNF770_P GSE76494
99 GSE76494_ZNF774_peaks.sga HEK293|ZNF774-GFP||combined ZNF774_P GSE76494
100 GSE76494_ZNF778_peaks.sga HEK293|ZNF778-GFP||combined ZNF778_P GSE76494
101 GSE76494_ZNF784_peaks.sga HEK293|ZNF784-GFP||combined ZNF784_P GSE76494
102 GSE76494_ZNF8_peaks.sga HEK293|ZNF8-GFP||combined ZNF8_P GSE76494
103 GSE76494_ZNF816_peaks.sga HEK293|ZNF816-GFP||combined ZNF816_P GSE76494
104 GSE76494_ZNF85_peaks.sga HEK293|ZNF85-GFP||combined ZNF85_P GSE76494
105 GSE76494_ZSCAN16_peaks.sga HEK293|ZSCAN16-GFP||combined ZSCAN16_P GSE76494
106 GSE76494_ZSCAN22_peaks.sga HEK293|ZSCAN22-GFP||combined ZSCAN22_P GSE76494
107 GSE76494_ZSCAN29_peaks.sga HEK293|ZSCAN29-GFP||combined ZSCAN29_P GSE76494
108 GSE76494_ZSCAN31_peaks.sga HEK293|ZSCAN31-GFP||combined ZSCAN31_P GSE76494
109 GSE76494_IKZF3_peaks.sga cell-type?|IKZF3 (tagged?)|| IKZF3_P GSE76494
110 GSE76494_KLF10_peaks.sga cell-type?|KLF10 (tagged?)|| KLF10_P GSE76494
111 GSE76494_KLF14_peaks.sga cell-type?|KLF14 (tagged?)|| KLF14_P GSE76494
112 GSE76494_ZFP3_peaks.sga cell-type?|ZFP3 (tagged?)|| ZFP3_P GSE76494
113 GSE76494_ZNF16_peaks.sga cell-type?|ZNF16 (tagged?)|| ZNF16_P GSE76494
114 GSE76494_ZNF189_peaks.sga cell-type?|ZNF189 (tagged?)|| ZNF189_P GSE76494
115 GSE76494_ZNF200_peaks.sga cell-type?|ZNF200 (tagged?)|| ZNF200_P GSE76494
116 GSE76494_ZNF213_peaks.sga cell-type?|ZNF213 (tagged?)|| ZNF213_P GSE76494
117 GSE76494_ZNF273_peaks.sga cell-type?|ZNF273 (tagged?)|| ZNF273_P GSE76494
118 GSE76494_ZNF415_peaks.sga cell-type?|ZNF415 (tagged?)|| ZNF415_P GSE76494
119 GSE76494_ZNF45_peaks.sga cell-type?|ZNF45 (tagged?)|| ZNF45_P GSE76494
120 GSE76494_ZNF524_peaks.sga cell-type?|ZNF524 (tagged?)|| ZNF524_P GSE76494
121 GSE76494_ZNF543_peaks.sga cell-type?|ZNF543 (tagged?)|| ZNF543_P GSE76494
122 GSE76494_ZNF594_peaks.sga cell-type?|ZNF594 (tagged?)|| ZNF594_P GSE76494
123 GSE76494_ZNF610_peaks.sga cell-type?|ZNF610 (tagged?)|| ZNF610_P GSE76494
124 GSE76494_ZNF675_peaks.sga cell-type?|ZNF675 (tagged?)|| ZNF675_P GSE76494
125 GSE76494_ZNF677_peaks.sga cell-type?|ZNF677 (tagged?)|| ZNF677_P GSE76494
126 GSE76494_ZNF684_peaks.sga cell-type?|ZNF684 (tagged?)|| ZNF684_P GSE76494
127 GSE76494_ZNF692_peaks.sga cell-type?|ZNF692 (tagged?)|| ZNF692_P GSE76494
128 GSE76494_ZNF71_peaks.sga cell-type?|ZNF71 (tagged?)|| ZNF71_P GSE76494
129 GSE76494_ZNF98_peaks.sga cell-type?|ZNF98 (tagged?)|| ZNF98_P GSE76494
130 GSE76494_ZSCAN30_peaks.sga cell-type?|ZSCAN30 (tagged?)|| ZSCAN30_P GSE76494
131 GSE76494_ZSCAN5C_peaks.sga cell-type?|ZSCAN5C (tagged?)|| ZSCAN5C_P GSE76494

Notes on samples nomenclature:

You should describe here what the sample description field in the table means. Delete this part if not needed

Merged samples:

if two or more samples have been merged (for example for technical replicas) add here a description of which files have generated which sample. If none has been merged simply delete this part.

Technical Notes

FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the genome using Bowtie v1.2.2. SAM files were then converted to BAM using samtools v1.9 and to BED using bamToBed v2.27.0 (bedtools). BED to SGA conversion was carried out using bed2sga (ChIP-Seq v. 1.5.5).

Peak files were converted from BED to SGA format using custom scripts (available from ftp://ccg.epfl.ch/mga/hg19/schmitges16/scripts/. The 5th field of the source BED file, which contains a peak intesnity score, was transferred to the optional 6th field in the SGA file

References

Genome browser viewable files

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Last update: 31 Jul 2020